PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1BL_DED873B03.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 734aa    MW: 84509.9 Da    PI: 6.7358
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1BL_DED873B03.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR149.51.5e-15126207191
                   FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                            +fY+++A  +GF  r+ +++k+       k ++ C+++g+ +++++   +++r+ ++   +C+ak+ vk++ +++we t +++eHnH+
  Traes_1BL_DED873B03.1 126 RFYSTHAMLTGFAARRGTNYKR------RKFHLLCNRSGRLKPTQDL--QRKRKVNVLGSQCQAKVIVKLH-NEQWEFTGVKHEHNHP 204
                            5********************9......5678***********9988..88888889999**********9.9*************** PP

                   FAR1  89 lap 91 
                            l+p
  Traes_1BL_DED873B03.1 205 LCP 207
                            *97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.4E-13126207IPR004330FAR1 DNA binding domain
PfamPF105516.8E-29330422IPR018289MULE transposase domain
PROSITE profilePS509669.075612648IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 734 aa     Download sequence    Send to blast
MEKEHVGKQA IPEGGLQSIG EINQGHASNG IGTTVQGLLA DMLHKQTNSV DPTVQQAEEQ  60
DQLHDVTEGH ELCSNDTSSG SDAGSSSGSE LDTELGKCFY PSIEALENSR PPEVGMKFPT  120
LEDAERFYST HAMLTGFAAR RGTNYKRRKF HLLCNRSGRL KPTQDLQRKR KVNVLGSQCQ  180
AKVIVKLHNE QWEFTGVKHE HNHPLCPSPS LTSFFLDHKY LSSEEKLFLR VLQQSRVNPR  240
KAMNIFQRMR SNFGNVSSSN EKDMSNSQCV DQWRKENSDV ETALKRFKEL ELRNLGFSYT  300
MQKDEDNIVR SLFWTDARSK VDYEIFGDFI AFSTTYSTNR HNMPFTPIIG VNNHGRILVF  360
GCALLQDQKA ETFKWMFQTF LHVMRGKLPK TIIIDQDEGM VKAIAEVMPQ VRHRLCKFSV  420
MRKAQEILGA FMAARGNMNA ELHSLVDNSL TEKEFEEGWA VLIERYDASE NEYLRLMWKT  480
RKNWEPVYFQ ADFYPFVESA EHGEGSNLLF KDNVLPKDRI EKFIEQYERI QEGIVKTEEE  540
DTLQSATEPA YFSMQPIEKH AARIYTRQIF LRVQKELYYS TALNAHEIQA GAAYRLEKVF  600
DYENPEFDRN SFEVLVEPGT HTFKCQCAKF TRDGILCCHI FRVFTQLGVI EIPAQYIVPR  660
WAREFREERL KEYEEKCSKR TEDRKRCAML LGKMADIGKG ICADSAKSGC FMLELDKVQE  720
KLVGADDQIV LWSK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014755557.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
TrEMBLW5A6P80.0W5A6P8_WHEAT; Uncharacterized protein
STRINGMLOC_67802.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.22e-80FAR1-related sequence 3
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]